NEW DISCOVERIES IN TAXONOMY OF Dalbergia GENUS IN GUATEMALA REVEALED BY MOLECULAR APPROACHES
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ABGD web. 2023. Accessed 25 February 2023. https://bioinfo.mnhn.fr/abi/public/abgd/abgdweb.html
ASAP web: Assemble Species by Automatic Partitioning. 2023. Accessed 02 March 2023. https://bioinfo.mnhn.fr/abi/public/asap/asapweb.html
Begerow, D., Bochum, R., Stockinger, H., Schoch, C.L., Seifert, K.A., Huhndorf, S., Robert, V., Spouge, J. L. and Levesque, C.A., 2012. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences, 109, pp. 6241-6246. https://doi.org/10.1073/pnas.1117018109
Bhagwat, R.M., Dholakia, B.B., Kadoo, N.Y., Balasundaran, M. and Gupta, V.S., 2015. Two new potential barcodes to discriminate Dalbergia species. PloS ONE, 10, pp. e0142965. https://doi.org/10.1371/journal.pone.0142965
Bieniek, W., Mizianty, M. and Szklarczyk, M., 2015. Sequence variation at the three chloroplast loci (matK, rbcL, trnH-psbA) in the Triticeae tribe (Poaceae): comments on the relationships and utility in DNA barcoding of selected species. Plant Systematics and Evolution, 301, pp. 1275–1286. https://doi.org/10.1007/s00606-014-1138-1
Bouckaert, R., Heled, J., Kühnert, D., Vaughan, T., Wu, C. H., Xie, D., Suchard, M. A., Rambaut, A. and Drummond, A.J., 2014. BEAST 2: A software platform for Bayesian evolutionary analysis. PloS Computational Biology, 10, pp. e1003537. https://doi.org/10.1371/journal.pcbi.1003537
bPTP server: a Bayesian implementation of the PTP model for species delimitation. 2013. Accessed 14 March 2023. https://species.h-its.org
Cardoso, D., Pennington, R.T., de Queiroz, L.P., Boatwright, J.S., Van Wyk, B.E., Wojciechowski, M.F. and Lavin, M., 2013. Reconstructing the deep-branching relationships of the papilionoid legumes. South African Journal of Botany, 89, pp. 58–75. https://doi.org/10.1016/j.sajb.2013.05.001
Carstens, B.C., Pelletier, T.A., Reid, N.M. and Satler, J.D., 2013. How to fail at species delimitation. Molecular Ecology, 22, pp. 4369–4383. https://doi.org/10.1111/mec.12413
de Carvalho, A.M., 1997. A Synopsis of the Genus Dalbergia (Fabaceae: Dalbergieae) in Brazil. Brittonia, 49, pp. 87–109. https://doi.org/10.2307/2807701
Chase, M.W., Cowan, R.S., Hollingsworth, P.M., Van Den Berg, C., Madriñán, S., Petersen, G., Seberg, O., Jørgsensen, T., Cameron, K.M., Carine, M., Pedersen, N., Hedderson, T.A.J., Conrad, F., Salazar, G. A., Richardson, J.E., Hollingsworth, M.L., Barraclough, T.G., Kelly, L. and Wilkinson, M., 2007. A proposal for a standardized protocol to barcode all land plants. Taxon, 56, pp. 295–299. https://doi.org/10.1002/tax.562004
Chen, S., Yao, H., Han, J., Liu, C., Song, J., Shi, L., Zhu, Y., Ma, X., Gao, T., Pang, X., Luo, K., Li, Y., Li, X., Jia, X., Lin, Y. and Leon, C., 2010. Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species. PloS ONE, 5, pp. e8613. https://doi.org/10.1371/journal.pone.0008613
Cheng, S., Zeng, W., Wang, J., Liu, L., Liang, H., Kou, Y., Wang, H., Fan, D. and Zhang, Z., 2021. Species delimitation of Asteropyrum (Ranunculaceae) based on morphological, molecular, and ecological variation. Frontiers in Plant Science, 12, pp. 681864. https://doi.org/10.3389/fpls.2021.681864
Costion, C., Ford, A., Cross, H., Crayn, D., Harrington, M. and Lowe, A., 2011. Plant DNA barcodes can accurately estimate species richness in poorly known floras. PloS ONE, 6, pp. E26841. https://doi.org/10.1371/journal.pone.0026841
Criscuolo, A. and Gribaldo, S., 2010. BMGE (block mapping and gathering with entropy): A new software for selection of phylogenetic informative regions from multiple sequence alignments. BMC Evolutionary Biology, 10, pp. 210. https://doi.org/10.1186/1471-2148-10-210
Cuénoud, P., Savolainen, V., Chatrou, L.W., Powell, M., Grayer, R.J. and Chase, M.W. 2002. Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK DNA sequences. American Journal of Botany, 89, pp. 132-144. https://doi.org/10.3732/ajb.89.1.132
Dayrat, B., 2005. Towards integrative taxonomy. Biological Journal of the Linnean Society, 85, pp. 407–415. https://doi.org/10.1111/j.1095-8312.2005.00503.x
Doyle, J.J. and Doyle, J.L., 1987. A rapid DNA isolation procedure for small quantities of fresh tissue. Phytochemical Bulletin, 19, 11–15.
Dumas, P., Barbut, J., Le Ru, B., Silvain, J.F., Clamens, A.L., D’Alençon, E. and Kergoat, G.J., 2015. Phylogenetic molecular species delimitations unravel potential new species in the pest genus spodoptera guenée, 1852 (Lepidoptera, Noctuidae). PloS ONE, 10, pp. e0122407. https://doi.org/10.1371/journal.pone.0122407
Espinoza, E.O., Wiemann, M.C., Barajas-Morales, J., Chavarria, G.D. and McClure, P.J., 2015. Forensic analysis of cites-protected Dalbergia timber from the Americas. International Association of Wood Anatomists Journal, 36, pp. 311–325. https://doi.org/10.1163/22941932-20150102
Flot, J.F., 2015. Species delimitation’s coming of age. Systematic Biology, 64, pp. 897–899. https://doi.org/10.1093/sysbio/syv071
Fujita, M.K., Leaché, A.D., Burbrink, F.T., McGuire, J.A. and Moritz, C., 2012. Coalescent-based species delimitation in an integrative taxonomy. Trends in Ecology and Evolution, 27, pp. 480–488. https://doi.org/10.1016/j.tree.2012.04.012
Gadagkar, S.R., Rosenberg, M.S. and Kumar, S., 2005. Inferring species phylogenies from multiple genes: Concatenated sequence tree versus consensus gene tree. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 304, pp. 64–74. https://doi.org/10.1002/jez.b.21026
Gagnon, E., Hilgenhof, R., Orejuela, A., McDonnell, A., Sablok, G., Aubriot, X., Giacomin, L., Gouvêa, Y., Bragionis, T., Stehmann, J.R., Bohs, L., Dodsworth, S., Martine, C., Poczai, P., Knapp, S. and Särkinen, T., 2022. Phylogenomic discordance suggests polytomies along the backbone of the large genus Solanum. American Journal of Botany, 109, pp. 580–601. https://doi.org/10.1002/ajb2.1827
Gasson, P., 2011. How precise can wood identification be? Wood anatomy’s role in support of the legal timber trade, especially cites. International Association of Wood Anatomists Journal, 32, pp. 137–154. https://doi.org/10.1163/22941932-90000049
Goldstein, P. Z. and DeSalle, R. 2010. Integrating DNA barcode data and taxonomic practice: Determination, discovery, and description. BioEssays, 33, pp. 135–147. https://doi.org/10.1002/bies.201000036
Gonzalez, M.A., Baraloto, C., Engel, J., Mori, S.A., Pétronelli, P., Riéra, B., Roger, A., Thébaud, C. and Chave, J., 2009. Identification of Amazonian trees with DNA barcodes. PloS ONE, 4, pp. e7483. https://doi.org/10.1371/journal.pone.0007483
Guo, B. and Kong, L., 2022. Comparing the efficiency of single-locus species delimitation methods within Trochoidea (Gastropoda: Vetigastropoda). Genes, 13, pp. 2273. https://doi.org/10.3390/genes13122273
Hartvig, I., Czako, M., Kjær, E. D., Nielsen, L.R. and Theilade, I., 2015. The use of DNA barcoding in identification and conservation of rosewood (Dalbergia spp.). PloS ONE, 10, pp. e0138231. https://doi.org/10.1371/journal.pone.0138231
Hassold, S., Lowry, P.P., Bauert, M.R., Razafintsalama, A., Ramamonjisoa, L. and Widmer, A., 2016. DNA barcoding of Malagasy rosewoods: Towards a molecular identification of CITES-Listed Dalbergia species. PloS ONE, 11, pp. e0157881. https://doi.org/10.1371/journal.pone.0157881
He, T., Jiao, L., Yu, M., Guo, J., Jiang, X. and Yin, Y., 2019. DNA barcoding authentication for the wood of eight endangered Dalbergia timber species using machine learning approaches. Holzforschung, 73, pp. 277–285. https://doi.org/10.1515/hf-2018-0076
Hebert, P.D.N., Cywinska, A., Ball, S.L. and DeWaard, J.R., 2003. Biological identifications through DNA barcodes. Proceedings of the Royal Society B: Biological Sciences, 270, pp. 313–321. https://doi.org/10.1098/rspb.2002.2218
Hebert, P.D.N. and Gregory, T.R., 2005. The promise of DNA barcoding for taxonomy. Systematic Biology, 54, pp. 852–859. https://doi.org/10.1080/10635150500354886
Hebert, P.D.N., Ratnasingham, S. and DeWaard, J.R., 2003. Barcoding animal life: Cytochrome c oxidase subunit 1 divergences among closely related species. Proceedings of the Royal Society B: Biological Sciences, 270, pp. 96–99. https://doi.org/10.1098/rsbl.2003.0025
Hilu, K., & Liang, H. (1997). The matK gene: sequence variation and application in plant systematics. American journal of botany, 84(6), 830. https://doi.org/10.2307/2445819
Hilu, K.W., Borsch, T., Müller, K., Soltis, D.E., Soltis, P.S., Savolainen, V., Chase, M.W., Powell, M.P., Alice, L.A., Evans, R., Sauquet, H., Neinhuis, C., Slotta, T.A.B., Rohwer, J.G., Campbell, C.S. and Chatrou, L.W. 2003. Angiosperm phylogeny based on matK sequence information. American Journal of Botany, 90, pp. 1758-1776. https://doi.org/10.3732/ajb.90.12.1758
Ji, Y., Yang, J., Landis, J. B., Wang, S., Yang, Z. and Zhang, Y., 2021. Deciphering the taxonomic delimitation of Ottelia acuminata (Hydrocharitaceae) using complete plastomes as super-barcodes. Frontiers in Plant Science, 12, pp. 1–13. https://doi.org/10.3389/fpls.2021.681270
Jones, G., 2017. Algorithmic improvements to species delimitation and phylogeny estimation under the multispecies coalescent. Journal of Mathematical Biology, 74, pp. 447–467. https://doi.org/10.1007/s00285-016-1034-0
Kalyaanamoorthy, S., Minh, B.Q., Wong, T.K.F., Von Haeseler, A. and Jermiin, L.S., 2017. ModelFinder: Fast model selection for accurate phylogenetic estimates. Nature Methods, 14, pp. 587–589. https://doi.org/10.1038/nmeth.4285
Kapli, P., Lutteropp, S., Zhang, J., Kobert, K., Pavlidis, P., Stamatakis, A. and Flouri, T., 2017. Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo. Bioinformatics, 33, pp. 1630–1638. https://doi.org/10.1093/bioinformatics/btx025
Katoh, K. and Standley, D.M., 2013. MAFFT multiple sequence alignment software version 7: Improvements in performance and usability. Molecular Biology and Evolution, 30, pp. 772–780. https://doi.org/10.1093/molbev/mst010
Kearse, M., Moir, R., Wilson, A., Stones-Havas, S., Cheung, M., Sturrock, S., Buxton, S., Cooper, A., Markowitz, S., Duran, C., Thierer, T., Ashton, B., Meintjes, P. and Drummond, A., 2012. Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics, 28, pp. 1647–1649. https://doi.org/10.1093/bioinformatics/bts199
Kekkonen, M. and Hebert, P.D.N., 2014. DNA barcode-based delineation of putative species: Efficient start for taxonomic workflows. Molecular Ecology Resources, 14, pp. 706–715. https://doi.org/10.1111/1755-0998.12233
Kimura, M., 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16, pp. 111–120. https://doi.org/10.1007/BF01731581
Kress, W.J., Wurdack, K.J., Zimmer, E.A., Weigt, L.A. and Janzen, D.H., 2005. Use of DNA barcodes to identify flowering plants. Proceedings of the National Academy of Sciences of the United States of America, 102, pp. 8369–8374. https://doi.org/10.1073/pnas.0503123102
Kumar, S., Stecher, G., Li, M., Knyaz, C. and Tamura, K., 2018. MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution, 35, pp. 1547–1549. https://doi.org/10.1093/molbev/msy096
Leigh, J. and Bryant, D., 2015. PopART: Full-feature software for haplotype network construction. Methods in Ecology and Evolution, 6, pp. 1110–1116. https://doi.org/https://doi.org/10.1111/2041-210X.12410
Li, Q., Wu, J., Wang, Y., Lian, X., Wu, F., Zhou, L., Huang, Z. and Zhu, S., 2017. The phylogenetic analysis of Dalbergia (Fabaceae: Papilionaceae) based on different DNA barcodes. Holzforschung, 71, pp. 939–949. https://doi.org/10.1515/hf-2017-0052
Linares, J., Herrera Sosa, M.E., Velásquez Méndez, L.E., Choxom Chamorro, P.E. and Ruiz-Chután, J.A, 2022. Informe de la prospección botánica del género Dalbergia en Guatemala. Análisis integral de especies arbóreas del género Dalbergia y similares a través del laboratorio forense de maderas para el fortalecimiento de la CITES en Guatemala. Proyecto CITES S-566. https://cites-tsp.org/sites/default/files/project_files/2023-01/Informe_de_la_Prospeccion_Botanica_del_Genero_Dalbergia_en_Guatemala_0.pdf
Linares, J. and Sousa, M., 2007. Nuevas especies de Dalbergia (Leguminosae: Papilionoideae: Dalbergieae) en México y Centroamérica. Ceiba, 48, pp. 61–82. https://doi.org/10.5377/ceiba.v48i1-2.439
Liu, J., Zhou, W. and Gong, X., 2015. Species delimitation, genetic diversity and population historical dynamics of Cycas diannanensis (Cycadaceae) occurring sympatrically in the red river region of China. Frontiers in Plant Science, 6, pp. 696. https://doi.org/10.3389/fpls.2015.00696
Mace, G.M., 2004. The role of taxonomy in species conservation. Philosophical Transactions of the Royal Society B: Biological Sciences, 359, pp. 711–719. https://doi.org/10.1098/rstb.2003.1454
Meier, R., Shiyang, K., Vaidya, G. and Ng, P.K.L., 2006. DNA barcoding and taxonomy in diptera: A tale of high intraspecific variability and low identification success. Systematic Biology, 55, pp. 715–728. https://doi.org/10.1080/10635150600969864
Miller, M.A., Pfeiffer, W. and Schwartz, T., 2012. The CIPRES science gateway: Enabling high-impact science for phylogenetics researchers with limited resources. In C. Stewart (Ed.), XSEDE ’12. Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the extreme to the campus and beyond (pp. 1–8). NY: Association for Computing Machinery.
Minh, B.Q., Nguyen, M.A.T. and Von Haeseler, A., 2013. Ultrafast approximation for phylogenetic bootstrap. Molecular Biology and Evolution, 30, pp. 1188–1195. https://doi.org/10.1093/molbev/mst024
Müller, K.F., Borsch, T. and Hilu, K.W. 2006. Phylogenetic utility of rapidly evolving DNA at high taxonomical levels: contrasting matK, trnT-F, and rbcL in basal angiosperms. Molecular Phylogenetics and Evolution, 41, pp. 99-117. https://doi.org/10.1016/j.ympev.2006.06.017
Mutanen, M., Kekkonen, M., Prosser, S. W. J., Hebert, P. D. N. and Kaila, L., 2015. One species in eight: DNA barcodes from type specimens resolve a taxonomic quagmire. Molecular Ecology Resources, 15, pp. 967–984. https://doi.org/10.1111/1755-0998.12361
Nguyen, L.T., Schmidt, H.A., Von Haeseler, A. and Minh, B.Q., 2015. IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution, 32, pp. 268–274. https://doi.org/10.1093/molbev/msu300
Nithaniyal, S., Newmaster, S. G., Ragupathy, S., Krishnamoorthy, D., Vassou, S. L. and Parani, M., 2014. DNA barcode authentication of wood samples of threatened and commercial timber trees within the tropical dry evergreen forest of india. PloS ONE, 9, pp. e107669. https://doi.org/10.1371/journal.pone.0107669
Niyomdham, C., 2002. An account of Dalbergia (Leguminosae-Papillionoideae) in Thailand. Thai Forest Bulletin (Botany), 30, pp. 124–166. https://li01.tci-thaijo.org/index.php/ThaiForestBulletin/article/view/24860
Okonechnikov, K., Golosova, O., Fursov, M., Varlamov, A., Vaskin, Y., Efremov, I., German Grehov, O. G., Kandrov, D., Rasputin, K., Syabro, M. and Tleukenov, T., (2012). Unipro UGENE: A unified bioinformatics toolkit. Bioinformatics, 28, 1166–1167. https://doi.org/10.1093/bioinformatics/bts091
Parmentier, I., Duminil, J., Kuzmina, M., Philippe, M., Thomas, D. W., Kenfack, D., Chuyong, G. B., Cruaud, C.and Hardy, O. J., 2013. How effective are DNA barcodes in the identification of African rainforest trees? PloS ONE, 8, pp. e54921. https://doi.org/10.1371/journal.pone.0054921
Petzold, A. and Hassanin, A., 2020. A comparative approach for species delimitation based on multiple methods of multi-locus DNA sequence analysis: A case study of the genus Giraffa (Mammalia, Cetartiodactyla). PloS ONE, 15, pp. 1–28. https ://doi.org/10.1371/journal.pone.0217956
Puillandre, N., Brouillet, S. and Achaz, G., 2021. ASAP: assemble species by automatic partitioning. Molecular Ecology Resources, 21, pp. 609–620. https://doi.org/10.1111/1755-0998.13281
Puillandre, N., Lambert, A., Brouillet, S. and Achaz, G., 2012. ABGD, Automatic Barcode Gap Discovery for primary species delimitation. Molecular Ecology, 21, pp. 1864–1877. https://doi.org/10.1111/j.1365-294X.2011.05239.x
R Core Team. R: A Language and Environment for Statistical Computing; GBIF: Vienna, Austria, 2022.
Rahaingoson, F.R., Oyebanji, O., Stull, G.W., Zhang, R. and Yi, T., 2022. A dated phylogeny of the pantropical genus Dalbergia L. f. (Leguminosae: Papilionoideae) and its implications for historical biogeography. Agronomy, 12, pp. 1612. https://doi.org/10.3390/agronomy12071612
Rambaut, A., Drummond, A.J., Xie, D., Baele, G. and Suchard, M.A., 2018. Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Systematic Biology, 67, pp. 901–904. https://doi.org/10.1093/sysbio/syy032
Reid, N.M. and Carstens, B.C., 2012. Phylogenetic estimation error can decrease the accuracy of species delimitation: A Bayesian implementation of the general mixed Yule-coalescent model. BMC Evolutionary Biology, 12, pp. 1471–2148. https://doi.org/10.1186/1471-2148-12-196
Ronquist, F. and Huelsenbeck, J.P., 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, pp. 1572–1574. https://doi.org/10.1093/bioinformatics/btg180
Rossini, B.C., Oliveira, C.A.M., Melo, F.A.G.de., Bertaco, V. de A., Astarloa, J. M.D,de., Rosso, J. J., Foresti, F. and Oliveira, C.. 2016. Highlighting Astyanax species diversity through DNA barcoding. PloS ONE, 11, pp. e0167203. https://doi.org/10.1371/journal.pone.0167203
Rozas, J., Ferrer-Mata, A., Sanchez-DelBarrio, J.C., Guirao-Rico, S., Librado, P., Ramos-Onsins, S.E. and Sanchez-Gracia, A., 2017. DnaSP 6: DNA sequence polymorphism analysis of large data sets. Molecular Biology and Evolution, 34, pp. 3299–3302. https://doi.org/10.1093/molbev/msx248
Sabadini, C.P., Machado, C.B., Vilhena, P.D.S., Garófalo, C.A. and Del Lama, M.A., 2020. Species delimitation and phylogenetic relationships in the genus Trypoxylon (Hymenoptera: Crabronidae) using molecular markers: an alternative to taxonomic impediment. Systematics and Biodiversity, 18, pp. 315–327. https://doi.org/10.1080/14772000.2020.1758824
Satler, J.D., Carstens, B.C. and Hedin, M., 2013. Multilocus species delimitation in a complex of morphologically conserved trapdoor spiders (mygalomorphae, antrodiaetidae, Aliatypus). Systematic Biology, 62, pp. 805–823. https://doi.org/10.1093/sysbio/syt041
Sonet, G., Jordaens, K., Nagy, Z.T., Breman, F.C., De Meyer, M., Backeljau, T. and Virgilio, M., 2013. Adhoc: An R package to calculate ad hoc distance thresholds for DNA barcoding identification. ZooKeys, 365, 329–335. https://doi.org/10.3897/zookeys.365.6034
Sotuyo, S. and Pedraza-Ortega, E., 2022. Insights into phylogenetic divergence of Dalbergia (Leguminosae : Dalbergiae) from Mexico and Central America. Frontiers in Ecology and Evolution, 10, pp. 910250. https://doi.org/10.3389/fevo.2022.910250
Sun, X. Q., Zhu, Y.J., Guo, J.L., Peng, B., Bai, M.M. and Hang, Y.Y., 2012. DNA barcoding the Dioscorea in China, a vital group in the evolution of monocotyledon: Use of matk gene for species discrimination. PloS ONE, 7, pp. e32057. https://doi.org/10.1371/journal.pone.0032057
Sunarno, B. and Ohashi, H., 1997. Dalbergia (Leguminosae) of Borneo. Japanese Journal of Botany, 72, pp. 198–220. https://doi.org/10.51033/jjapbot.72_4_9168
Tallei, T.E. and Kolondam, B.J., 2015. DNA Barcoding of Sangihe Nutmeg (Myristica fragrans) using matK Gene. HAYATI Journal of Biosciences, 22, pp. 41–47. https://doi.org/10.4308/hjb.22.1.41
Templeton, A.R., Crandall, K.A. and Sing, C.F., 1992. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics, 132, pp. 619–633. https://doi.org/10.1093/genetics/132.2.619
The Exelixis Lab. 2013. Accessed 18 April 2023. https://cme.h-its.org/exelixis/
Tsykun, T., Rellstab, C., Dutech, C., Sipos, G. and Prospero, S., 2017. Comparative assessment of SSR and SNP markers for inferring the population genetic structure of the common fungus Armillaria cepistipes. Heredity, 119, pp. 371–380. https://doi.org/10.1038/hdy.2017.48
Vardeman, E. and Runk, J.V., 2020. Panama’s illegal rosewood logging boom from Dalbergia retusa. Global Ecology and Conservation, pp. e01098. https://doi.org/10.1016/j.gecco.2020.e01098
Vatanparast, M., Klitgård, B. B., Adema, F.A.C.B., Pennington, R.T., Yahara, T. and Kajita, T., 2013. First molecular phylogeny of the pantropical genus Dalbergia: Implications for infrageneric circumscription and biogeography. South African Journal of Botany, 89, pp. 143–149. https://doi.org/10.1016/j.sajb.2013.07.001
Vitecek, S., Ku?ini?, M., Previši?, A., Živi?, I., Stojanovi?, K., Keresztes, L., Bálint, M., Hoppeler, F., Waringer, J., Graf, W., & Pauls, S.U., 2017. Integrative taxonomy by molecular species delimitation: multi-locus data corroborate a new species of Balkan Drusinae micro-endemics. BMC Evolutionary Biology, 17, pp. 129. https://doi.org/10.1186/s12862-017-0972-5
Wang, S.N., Zhang, F.D., Huang, A.M. and Zhou, Q., 2016. Distinction of four Dalbergia species by FTIR, 2nd derivative IR, and 2D-IR spectroscopy of their ethanol-benzene extractives. Holzforschung, 706, pp. 503–510. https://doi.org/10.1515/hf-2015-0125
Wei, S.J., Lu, Y. Bin, Ye, Q.Q. and Tang, S.Q., 2017. Population genetic structure and phylogeography of Camellia flavida (Theaceae) based on chloroplast and nuclear DNA sequences. Frontiers in Plant Science, 8, pp. 718. https://doi.org/10.3389/fpls.2017.00718
Wu, C.C., Chu, F.H., Ho, C.K., Sung, C.H. and Chang, S.H., 2017. Comparative analysis of the complete chloroplast genomic sequence and chemical components of Cinnamomum micranthum and Cinnamomum kanehirae. Holzforschung, 71, pp. 189–197. https://doi.org/10.1515/hf-2016-0133
Young, A.D. and Gillung, J.P., 2020. Phylogenomics — principles, opportunities and pitfalls of big-data phylogenetics. Systematic Entomology, 45, pp. 225–247. https://doi.org/10.1111/syen.12406
Yu, M., Jiao, L., Guo, J., Wiedenhoeft, A.C., He, T., Jiang, X. and Yin, Y., 2017. DNA barcoding of vouchered xylarium wood specimens of nine endangered Dalbergia species. Planta, 246, pp. 1165–1176. https://doi.org/10.1007/s00425-017-2758-9
Yu, M., Liu, K., Zhou, L., Zhao, L. and Liu, S., 2016. Testing three proposed DNA barcodes for the wood identification of Dalbergia odorifera T. Chen and Dalbergia tonkinensis Prain. Holzforschung, 70, pp. 127–136. https://doi.org/10.1515/hf-2014-0234
Zhang, J., Kapli, P., Pavlidis, P. and Stamatakis, A., 2013. A general species delimitation method with applications to phylogenetic placements. Bioinformatics, 29, pp. 2869–2876. https://doi.org/10.1093/bioinformatics/btt499
Zimmerman, S.J., Aldridge, C.L. and Oyler-Mccance, S.J., 2020. An empirical comparison of population genetic analyses using microsatellite and SNP data for a species of conservation concern. BMC Genomics, 21, 1–16. https://doi.org/10.1186/s12864-020-06783-9
URN: http://www.revista.ccba.uady.mx/urn:ISSN:1870-0462-tsaes.v27i3.49138
DOI: http://dx.doi.org/10.56369/tsaes.4913
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